PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01002745001
Common NameLOC100854363, VIT_00s0868g00010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GeBP
Protein Properties Length: 438aa    MW: 48785.9 Da    PI: 4.7069
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01002745001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573119.81.5e-37202299297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                        +fqr+wseeDe+ +L+G+id+ ak+g+ p+   d+++fy+fvk+ ++ ++s+ ql++K rrLKkK+ ++v++ak g++p+f+k+h+q +fel
  GSVIVT01002745001 202 MFQRIWSEEDELGILKGMIDYSAKNGSVPYPngDMNEFYDFVKNTLHGDFSRVQLTDKARRLKKKYSNNVSRAKLGEDPTFQKPHEQRAFEL 293
                        79*************************777667*********************************************************** PP

             DUF573  92 skkiWg 97 
                        skkiWg
  GSVIVT01002745001 294 SKKIWG 299
                        *****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-34203299IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAPKRPPPAE DPPAPSSTSE EEEENEENEE NEEEEEEEEE SSPEESSEEE EEGEENKSTV  60
LTPPPAVDKK ASSNKLVATT PAKSTPQSSS EDEEDGSESE SESDSPPKSR RSSRGADPTI  120
KPIATKPMEE TPKSKKARSK PGVSVTPSPV KSSPVKPSNS KRPGEIGLER KESKRAKKKE  180
PEAEAEEEED GKKTGDDSKK QMFQRIWSEE DELGILKGMI DYSAKNGSVP YPNGDMNEFY  240
DFVKNTLHGD FSRVQLTDKA RRLKKKYSNN VSRAKLGEDP TFQKPHEQRA FELSKKIWGG  300
EGNSVGVQQS NKANGKARKN QKPNKAVKVE DVEVLSVING DDKEAVKLEN EPKSEPPKKY  360
SLVVSDFTRI NESVGMSSSM DRAIEIGLGL LSEPLKAELK EKWKELEDEE FQLYMKKLDL  420
IQMEARVSMQ AYRAKHQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.87590.0bud| flower| fruit| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4247620.0AM424762.2 Vitis vinifera contig VV78X141012.31, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635491.10.0PREDICTED: mediator-associated protein 1
TrEMBLD7TRY00.0D7TRY0_VITVI; Putative uncharacterized protein
STRINGVIT_00s0868g00010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4222523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-28DNA-binding storekeeper protein-related transcriptional regulator